Lineplot of barcode abundances in two conditions

Takes a dataframe of barcode counts, computes and plots the abundance of each barcode in the library sample

Usage

plotLibraryDiversity(barcodes, samplename = "Library", cutoff = 10, skew = F)

Arguments

barcodes

dataframe containing raw counts of barcodes

samplename

sample condition of interest

cutoff

rowsum cutoff defining rows to keep

skew

Logical. Calculate and plot the library skew ratio (90th percentile / 10th percentile)

Value

Returns a barcode library frequency plot

Details

plotLibraryDiversity

Lineplot of the barcode abundances in two different experimental settings