Cumulative sum plot of barcode abundances in a reference library

Takes a dataframe of barcode counts, computes the median abundance of each barcode for two specific conditions, then do a line plot for both conditions

Usage

plotLibraryCumSum(barcodes, samplename = "Library", cutoff = 10)

Arguments

barcodes

dataframe containing raw counts of barcodes

samplename

sample condition of interest

cutoff

rowsum cutoff defining rows to keep

Value

Returns a cumulative sum plot for the desired barcode library sample

Details

plotLibraryCumSum

Plot the cumulative sum of the barcode abundances in a barcode library