plotBARtabMapQC — plotBARtabMapQC • bartools

Plot mapped read percentages from a BARtab run folder. Shows reads with at least one alignment.

Usage

plotBARtabMapQC(
  dir = NULL,
  recursive = T,
  patternLog = "*bowtie.log",
  fullNames = T,
  plot = T,
  title = "BARtab Mapping QC"
)

Arguments

dir: directory where BARtab was successfuly run on barcode count datasets
recursive: Logical. TRUE will recurse regex search into subdirectories#'
patternLog: regex string to specify filter stage log files
fullNames: Logical. Return full names of files detected by regex search
plot: Logical. Generate plots. False returns raw data
title: Optional. title of plots.

Value

Returns a plot / dataset containing BARtab Filtering stage QC data