plotBARtabFilterQC

Plot filtered read percentages from a BARtab run folder

Usage

plotBARtabFilterQC(
  dir = NULL,
  recursive = T,
  patternLog = "*filter.log",
  patternValue = "reads",
  fullNames = T,
  normalised = F,
  plot = T,
  title = "BARtab Filter QC"
)

Arguments

dir

directory where BARtab was successfuly run on barcode count datasets

recursive

Logical. TRUE will recurse regex search into subdirectories#'

patternLog

regex string to specify filter stage log files

patternValue

grep on this string in log files

fullNames

Logical. Return full names of files detected by regex search

normalised

Logical. log10 normalise counts

plot

Logical. Generate plots. False returns raw data

title

Optional. title of plots.

Value

Returns a plot / dataset containing BARtab Filtering stage QC data