Filter barcodes from single-cell sample
Usage
filterBarcodes(counts, umiCountFilter = 1, umiFractionFilter = 0.3)
Arguments
- counts
Dataframe with barcodes and UMI counts per cell
- umiCountFilter
Minimum number of UMIs per barcode per cell
- umiFractionFilter
Minimum fraction of UMIs per barcode per cell compared to dominant barcode in cell (barcode supported by most UMIs)
Value
Returns a data frame with one row per cell ID